feat: Integrate SonarQube analysis into CI workflows

### Summary of Changes
- Added SonarQube analysis steps to all CI workflows (API Docs, API Gateway, Frontend, Service Adapters).
- Configured SonarQube properties for each service to ensure proper reporting and analysis.
- Enhanced test coverage reporting by specifying multiple coverage reporters in test commands.
- Updated Maven and Python dependencies to include SonarQube integration tools.

### Expected Results
- CI pipelines will now send test and coverage results to SonarQube for better quality tracking.
- Improved visibility into code quality and test coverage across all services.

.gitea/workflows/api-docs.yml

@@ -101,15 +101,27 @@ jobs:
         
     - name: Run tests
       run: |
-        npm test -- --coverage --watchAll=false
+        npm test -- --coverage --watchAll=false --coverageReporters=lcov --coverageReporters=text --coverageReporters=html
         npm run test:coverage
         
-    - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v3
-      with:
-        file: ./services/api-docs/coverage/lcov.info
-        flags: api-docs
-        name: api-docs-coverage
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending API Docs results to SonarQube..."
+        # Install SonarQube Scanner for Node.js
+        npm install -g sonar-scanner
+        
+        # Run SonarQube analysis
+        sonar-scanner \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=api-docs \
+          -Dsonar.sources=. \
+          -Dsonar.tests=__tests__ \
+          -Dsonar.javascript.lcov.reportPaths=coverage/lcov.info \
+          -Dsonar.testExecutionReportPaths=test-results.xml
         
     - name: Test results summary
       if: always()

.gitea/workflows/api-gateway.yml

@@ -125,13 +125,40 @@ jobs:
           echo "TEST_REPORTS_EXIST=false" >> $GITHUB_ENV
         fi
       
-    - name: Generate test report
-      uses: dorny/test-reporter@v1
+    - name: Send test results to SonarQube
       if: env.TEST_REPORTS_EXIST == 'true'
-      with:
-        name: Maven Tests (Java ${{ matrix.java-version }})
-        path: target/surefire-reports/*.xml
-        reporter: java-junit
+      run: |
+        echo "Sending test results to SonarQube..."
+        # Configure SonarQube properties
+        cat > sonar-project.properties << EOF
+        sonar.projectKey=labFusion
+        sonar.projectName=LabFusion
+        sonar.projectVersion=1.0.0
+        sonar.modules=api-gateway
+        sonar.sources=src/main/java
+        sonar.tests=src/test/java
+        sonar.java.binaries=target/classes
+        sonar.java.test.binaries=target/test-classes
+        sonar.junit.reportPaths=target/surefire-reports
+        sonar.coverage.jacoco.xmlReportPaths=target/site/jacoco/jacoco.xml
+        sonar.host.url=${{ secrets.SONAR_HOST_URL }}
+        sonar.login=${{ secrets.SONAR_TOKEN }}
+        EOF
+        
+        # Run SonarQube analysis
+        ./mvnw sonar:sonar \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=api-gateway \
+          -Dsonar.sources=src/main/java \
+          -Dsonar.tests=src/test/java \
+          -Dsonar.java.binaries=target/classes \
+          -Dsonar.java.test.binaries=target/test-classes \
+          -Dsonar.junit.reportPaths=target/surefire-reports \
+          -Dsonar.coverage.jacoco.xmlReportPaths=target/site/jacoco/jacoco.xml
       
     - name: Fail if no test reports found
       if: env.TEST_REPORTS_EXIST == 'false'
@@ -152,14 +179,10 @@ jobs:
         ./mvnw pmd:check
         
     - name: Generate code coverage
-      run: ./mvnw jacoco:report
-      
-    - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v3
-      with:
-        file: ./services/api-gateway/target/site/jacoco/jacoco.xml
-        flags: api-gateway
-        name: api-gateway-coverage
+      run: |
+        echo "Generating JaCoCo code coverage report..."
+        ./mvnw jacoco:report
+        echo "Code coverage report generated at target/site/jacoco/jacoco.xml"
 
   build:
     runs-on: [self-hosted]

.gitea/workflows/ci.yml

@@ -49,6 +49,26 @@ jobs:
     - name: Run tests
       run: ./mvnw test
       
+    - name: Generate code coverage
+      run: ./mvnw jacoco:report
+      
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending API Gateway results to SonarQube..."
+        ./mvnw sonar:sonar \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=api-gateway \
+          -Dsonar.sources=src/main/java \
+          -Dsonar.tests=src/test/java \
+          -Dsonar.java.binaries=target/classes \
+          -Dsonar.java.test.binaries=target/test-classes \
+          -Dsonar.junit.reportPaths=target/surefire-reports \
+          -Dsonar.coverage.jacoco.xmlReportPaths=target/site/jacoco/jacoco.xml
+      
     - name: Run code quality checks
       run: ./mvnw spotbugs:check checkstyle:check
       
@@ -104,13 +124,26 @@ jobs:
       
     - name: Run tests
       run: |
-        pytest --cov=. --cov-report=xml --cov-report=html
+        pytest --cov=. --cov-report=xml --cov-report=html --junitxml=tests/reports/junit.xml
         
-    - name: Upload coverage reports
-      uses: codecov/codecov-action@v3
-      with:
-        file: ./coverage.xml
-        flags: service-adapters
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending Service Adapters results to SonarQube..."
+        # Install SonarQube Scanner for Python
+        pip install sonar-scanner
+        
+        # Run SonarQube analysis
+        sonar-scanner \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=service-adapters \
+          -Dsonar.sources=. \
+          -Dsonar.tests=tests \
+          -Dsonar.python.coverage.reportPaths=coverage.xml \
+          -Dsonar.python.xunit.reportPath=tests/reports/junit.xml
         
     - name: Build Docker image (test only)
       run: docker build -t service-adapters:test .
@@ -159,7 +192,26 @@ jobs:
       run: npm run lint
       
     - name: Run tests
-      run: npm test
+      run: npm test -- --coverage --coverageReporters=lcov --coverageReporters=text --coverageReporters=html
+      
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending API Docs results to SonarQube..."
+        # Install SonarQube Scanner for Node.js
+        npm install -g sonar-scanner
+        
+        # Run SonarQube analysis
+        sonar-scanner \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=api-docs \
+          -Dsonar.sources=. \
+          -Dsonar.tests=__tests__ \
+          -Dsonar.javascript.lcov.reportPaths=coverage/lcov.info \
+          -Dsonar.testExecutionReportPaths=test-results.xml
       
     - name: Build application
       run: npm run build
@@ -211,7 +263,26 @@ jobs:
       run: npm run lint
       
     - name: Run tests
-      run: npm test -- --coverage --watchAll=false
+      run: npm test -- --coverage --watchAll=false --coverageReporters=lcov --coverageReporters=text --coverageReporters=html
+      
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending Frontend results to SonarQube..."
+        # Install SonarQube Scanner for Node.js
+        npm install -g sonar-scanner
+        
+        # Run SonarQube analysis
+        sonar-scanner \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=frontend \
+          -Dsonar.sources=src \
+          -Dsonar.tests=src \
+          -Dsonar.javascript.lcov.reportPaths=coverage/lcov.info \
+          -Dsonar.testExecutionReportPaths=test-results.xml
       
     - name: Build application
       run: npm run build

.gitea/workflows/frontend.yml

@@ -73,15 +73,27 @@ jobs:
         
     - name: Run tests
       run: |
-        npm test -- --coverage --watchAll=false --passWithNoTests
+        npm test -- --coverage --watchAll=false --passWithNoTests --coverageReporters=lcov --coverageReporters=text --coverageReporters=html
         npm run test:coverage
         
-    - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v3
-      with:
-        file: ./frontend/coverage/lcov.info
-        flags: frontend
-        name: frontend-coverage
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending Frontend results to SonarQube..."
+        # Install SonarQube Scanner for Node.js
+        npm install -g sonar-scanner
+        
+        # Run SonarQube analysis
+        sonar-scanner \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=frontend \
+          -Dsonar.sources=src \
+          -Dsonar.tests=src \
+          -Dsonar.javascript.lcov.reportPaths=coverage/lcov.info \
+          -Dsonar.testExecutionReportPaths=test-results.xml
         
     - name: Test results summary
       if: always()

.gitea/workflows/service-adapters.yml

@@ -85,15 +85,28 @@ jobs:
         
     - name: Run tests
       run: |
-        pytest --cov=. --cov-report=xml --cov-report=html --cov-report=term-missing
+        pytest --cov=. --cov-report=xml --cov-report=html --cov-report=term-missing --junitxml=tests/reports/junit.xml
         pytest --cov=. --cov-report=xml --cov-report=html --cov-report=term-missing --cov-fail-under=80
         
-    - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v3
-      with:
-        file: ./services/service-adapters/coverage.xml
-        flags: service-adapters
-        name: service-adapters-coverage
+    - name: Send results to SonarQube
+      run: |
+        echo "Sending Service Adapters results to SonarQube..."
+        # Install SonarQube Scanner for Python
+        pip install sonar-scanner
+        
+        # Run SonarQube analysis
+        sonar-scanner \
+          -Dsonar.host.url=${{ secrets.SONAR_HOST_URL }} \
+          -Dsonar.login=${{ secrets.SONAR_TOKEN }} \
+          -Dsonar.projectKey=labFusion \
+          -Dsonar.projectName="LabFusion" \
+          -Dsonar.projectVersion=1.0.0 \
+          -Dsonar.modules=service-adapters \
+          -Dsonar.sources=. \
+          -Dsonar.tests=tests \
+          -Dsonar.python.coverage.reportPaths=coverage.xml \
+          -Dsonar.python.xunit.reportPath=tests/reports/junit.xml
+        
         
     - name: Test results summary
       if: always()